Wigits Object

WiGiTS file parsing and manipulation.

Super class

nemo::Workflow -> Wigits

Methods

Public methods

• Wigits$new()

• Wigits$get_metadata()

• Wigits$clone()

Inherited methods

• nemo::Workflow$filter_files()
• nemo::Workflow$get_raw_schemas_all()
• nemo::Workflow$get_tbls()
• nemo::Workflow$get_tidy_schemas_all()
• nemo::Workflow$list_files()
• nemo::Workflow$nemofy()
• nemo::Workflow$print()
• nemo::Workflow$tidy()
• nemo::Workflow$write()

---

Method new()

Create a new Wigits object.

Usage

Wigits$new(path = NULL)

Arguments

path

(character(n))
Path(s) to Wigits results.

---

Method get_metadata()

Get metadata. Overwrites parent class to handle tidywigits not being a dependency of nemo (see tidywigits issue 167)

Usage

Wigits$get_metadata(
  input_id,
  output_id,
  output_dir,
  pkgs = c("nemo", "tidywigits")
)

Arguments

input_id

(character(1))
Input ID to use for the dataset (e.g. run123).

output_id

(character(1))
Output ID to use for the dataset (e.g. run123).

output_dir

(character(1))
Output directory.

pkgs

(character(n))
Which R packages to extract versions for.

Returns

List with metadata

---

Method clone()

The objects of this class are cloneable with this method.

Usage

Wigits$clone(deep = FALSE)

Arguments

deep

Whether to make a deep clone.

Examples

if (FALSE) { # \dontrun{
path <- here::here("nogit/oa_v2")
w <- Wigits$new(path)
x <-
  w$nemofy(
    diro = "nogit/test_data",
    format = "parquet",
    input_id = "run1"
)
dbconn <- DBI::dbConnect(
  drv = RPostgres::Postgres(),
  dbname = "nemo",
  user = "orcabus"
)
x <-
  w$nemofy(
    format = "db",
    input_id = "runABC456",
    dbconn = dbconn
)
DBI::dbDisconnect(dbconn)
} # }