Package index • tidywigits

Base Classes

Config: Config Object

Tool: Tool Object

Workflow: Workflow Object

Tool Classes

Alignments: Alignments Object

Amber: Amber Object

Bamtools: Bamtools Object

Chord: Chord Object

Cobalt: Cobalt Object

Cuppa: Cuppa Object

Esvee: Esvee Object

Flagstats: Flagstats Object

Isofox: Isofox Object

Lilac: Lilac Object

Linx: Linx Object

Purple: Purple Object

Sage: Sage Object

Sigs: Sigs Object

Virusbreakend: Virusbreakend Object

Virusinterpreter: Virusinterpreter Object

Oncoanalyser

Oncoanalyser: Oncoanalyser Object

Config

config_prep_raw(): Prepare config from raw file

config_prep_raw_schema(): Prepare config schema from raw file

Other

date_log(): Print current timestamp for logging

empty_tbl(): Create Empty Tibble

list_files_dir(): List Files

nemo_out_formats(): Output Formats Supported

nemo_write(): Write data

parse_file(): Parse file

schema_guess(): Guess Schema

valid_out_fmt(): Output Format is Valid