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v0.0.2 (2025-07-10)

• v0.0.2 - v0.0.1 diff

Mostly Shiny, Conda, Docker, pkgdown and GitHub Actions support.

• Add GitHub Actions for deployment of the following (pr130, iss9):
  • Conda: add recipe and rattler-builder (pr124, iss4)
  • Docker: add Dockerfile (pr130)
  • Shiny: add summary app (pr122)
  • CLI: Add listing and tidy include/exclude support (pr116)
  • Add pkgdown support (pr125, iss37)
  • Add DVC support with some purple test data (pr126, iss59)
• Optimise file listing (pr131, iss127)
  • Remove File class

v0.0.1 (2025-06-19)

Initial release of tidywigits.

• R pkg skeleton (pr6)
• Add Config, File and Tool classes (pr12)
• Add Workflow class (pr99, iss97)
• Add Oncoanalyser class (pr52, pr101, iss39)
• Add bump-my-version (pr10, iss3)
• Add pre-commit hooks (pr8, iss2)
• Add Makefile and air.toml (pr7)
• Support for main outputs from the following WiGiTS tools:
  • Alignments (pr28, pr79, iss17, iss77)
  • Amber (pr14, iss13)
  • Bamtools (pr44, pr66, iss62, iss16)
  • Chord (pr29, pr38, iss18, iss38)
  • Cobalt (pr33, iss15)
  • Cuppa (pr30, pr68, iss19, iss67)
  • Esvee (pr87, iss61)
  • Flagstats (pr45, pr46, iss20)
  • Isofox (pr80, iss76)
  • Lilac (pr31, iss21)
  • Linx (pr50, pr89, iss22, iss88)
  • Purple (pr36, pr51, iss23, iss49)
  • Sage (pr48, pr72, pr73, iss24, iss71, iss57)
  • Sigs (pr47, iss25)
  • Virusbreakend (pr42, iss26)
  • Virusinterpreter (pr40, pr65, iss27, iss41)
• Schema:
  • versioning (pr64, iss43)
  • guesser (pr69, iss63)
• Vignettes:
  • Setup (pr92, iss60)
• Tool:
  • write functionality (pr98, iss95)
  • optionally output raw parsed tibbles (pr94, iss91)
• UML diagram (pr107, iss106)
• DB schema (pr111, iss110)
• CLI support (pr114)