Installation • tidywigits

There are several ways to install {tidywigits}:

R

Using {remotes} directly from GitHub:

install.packages("remotes")
remotes::install_github("umccr/tidywigits") # latest main commit
remotes::install_github("umccr/tidywigits@v0.0.5") # released version

Conda

The conda package is available from the umccr channel at https://anaconda.org/umccr/r-tidywigits.

conda create \
  -n tidywigits_env \
  -c umccr -c conda-forge \
  r-tidywigits==0.0.5

conda activate tidywigits_env

Docker

The Docker image is available from the GitHub Container Registry at https://github.com/umccr/tidywigits/pkgs/container/tidywigits.

docker pull --platform linux/amd64 ghcr.io/umccr/tidywigits:0.0.5

Pixi

If you use Pixi, you can create a new isolated environment with the deployed conda package:

pixi init -c umccr -c conda-forge ./tidy_env
cd ./tidy_env
pixi add r-tidywigits==0.0.5

Then you can create a task to run the tidywigits.R CLI script:

pixi task add tw "tidywigits.R"
pixi run tw --help

Or activate the environment and use tidywigits directly in an R environment:

pixi shell
R

library(tidywigits)