Virusbreakend Object

Virusbreakend file parsing and manipulation.

Super class

tidywigits::Tool -> Virusbreakend

Methods

Public methods

• Virusbreakend$new()

• Virusbreakend$parse_summary()

• Virusbreakend$tidy_summary()

• Virusbreakend$clone()

Inherited methods

• tidywigits::Tool$.eval_func()
• tidywigits::Tool$.parse_file()
• tidywigits::Tool$.parse_file_nohead()
• tidywigits::Tool$.tidy_file()
• tidywigits::Tool$filter_files()
• tidywigits::Tool$list_files()
• tidywigits::Tool$nemofy()
• tidywigits::Tool$print()
• tidywigits::Tool$tidy()
• tidywigits::Tool$write()

---

Method new()

Create a new Virusbreakend object.

Usage

Virusbreakend$new(path = NULL, files_tbl = NULL)

Arguments

path

(character(1))
Output directory of tool. If files_tbl is supplied, this basically gets ignored.

files_tbl

(tibble(n))
Tibble of files from list_files_dir.

---

Method parse_summary()

Read vcf.summary.tsv file.

Usage

Virusbreakend$parse_summary(x)

Arguments

x

(character(1))
Path to file.

---

Method tidy_summary()

Tidy vcf.summary.tsv file.

Usage

Virusbreakend$tidy_summary(x)

Arguments

x

(character(1))
Path to file.

---

Method clone()

The objects of this class are cloneable with this method.

Usage

Virusbreakend$clone(deep = FALSE)

Arguments

deep

Whether to make a deep clone.

Examples

if (FALSE) { # \dontrun{
path <- here::here(
  "nogit"
)
v <- Virusbreakend$new(path)
} # }