Sigs Object

Sigs file parsing and manipulation.

Super class

tidywigits::Tool -> Sigs

Methods

Public methods

• Sigs$new()

• Sigs$parse_allocation()

• Sigs$tidy_allocation()

• Sigs$parse_snvcounts()

• Sigs$tidy_snvcounts()

• Sigs$clone()

Inherited methods

• tidywigits::Tool$.eval_func()
• tidywigits::Tool$.parse_file()
• tidywigits::Tool$.parse_file_nohead()
• tidywigits::Tool$.tidy_file()
• tidywigits::Tool$filter_files()
• tidywigits::Tool$list_files()
• tidywigits::Tool$nemofy()
• tidywigits::Tool$print()
• tidywigits::Tool$tidy()
• tidywigits::Tool$write()

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Method new()

Create a new Sigs object.

Usage

Sigs$new(path = NULL, files_tbl = NULL)

Arguments

path

(character(1))
Output directory of tool. If files_tbl is supplied, this basically gets ignored.

files_tbl

(tibble(n))
Tibble of files from list_files_dir.

---

Method parse_allocation()

Read allocation.tsv file.

Usage

Sigs$parse_allocation(x)

Arguments

x

(character(1))
Path to file.

---

Method tidy_allocation()

Tidy allocation.tsv file.

Usage

Sigs$tidy_allocation(x)

Arguments

x

(character(1))
Path to file.

---

Method parse_snvcounts()

Read snv_counts.csv file.

Usage

Sigs$parse_snvcounts(x)

Arguments

x

(character(1))
Path to file.

---

Method tidy_snvcounts()

Tidy snv_counts.csv file.

Usage

Sigs$tidy_snvcounts(x)

Arguments

x

(character(1))
Path to file.

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Method clone()

The objects of this class are cloneable with this method.

Usage

Sigs$clone(deep = FALSE)

Arguments

deep

Whether to make a deep clone.

Examples

if (FALSE) { # \dontrun{
path <- here::here(
  "nogit"
)
s <- Sigs$new(path)
} # }