Introduction

Figure 1

dummy workflow image

Figure 2

Dummy workflow tool descriptor

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props compute 01 png

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props compute 02 png

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props compute 03 png

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Figure 9

RNASeq Workflow graph
Diagram showing a typical RNA sequencing workflow. The workflow is linear, starting from taking biological samples and sequence reads, through quality control and trimming steps, to mapping to a genome and counting gene reads, to finally carrying out statistical analysis to identify differentially expressed genes.

CWL and Shell Tools

Developing Multi-Step Workflows

Figure 1

Ep3 Empty Graph

Figure 2

Ep3 empty graph answer

Figure 3

Ep3 graph answer

Figure 4

VSCode CWL Preview step 1

Figure 5

VSCode CWL Preview step 2

Resources for Reusing Tools and Scripts

Debugging Workflows

More Information