Workflow1 Object

Workflow1 file parsing and manipulation.

Super class

nemo::Workflow -> Workflow1

Methods

Public methods

• Workflow1$new()

• Workflow1$clone()

Inherited methods

• nemo::Workflow$filter_files()
• nemo::Workflow$get_raw_schemas_all()
• nemo::Workflow$get_tbls()
• nemo::Workflow$get_tidy_schemas_all()
• nemo::Workflow$list_files()
• nemo::Workflow$nemofy()
• nemo::Workflow$print()
• nemo::Workflow$tidy()
• nemo::Workflow$write()

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Method new()

Create a new Workflow1 object.

Usage

Workflow1$new(path = NULL)

Arguments

path

(character(n))
Path(s) to Workflow1 results.

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Method clone()

The objects of this class are cloneable with this method.

Usage

Workflow1$clone(deep = FALSE)

Arguments

deep

Whether to make a deep clone.

Examples

path <- system.file("extdata/tool1", package = "nemo")
odir <- tempdir()
id <- "workflow1_run1"
w <- Workflow1$new(path)
x <- w$nemofy(odir = odir, format = "parquet", id = id)
(lf <- list.files(odir, pattern = "tool1.*parquet", full.names = FALSE))
#> [1] "sampleA_2_tool1_table1.parquet" "sampleA_tool1_table1.parquet"  
#> [3] "sampleA_tool1_table2.parquet"   "sampleA_tool1_table3.parquet"