Runs a MutationalPatterns Workflow.
Usage
sig_workflow_run(vcf, sample_nm, ref_genome = "hg38", outdir)
Arguments
- vcf
VCF file with SNVs.
- sample_nm
Sample name.
- ref_genome
Human genome assembly string: hg38 (default), hg19 or GRCh37.
- outdir
Directory path to output all the results to.
Details
Writes plots and signature contribution tables to outdir.