Skip to contents

Convert Manta VCF to data.frame

Source: R/chord.R
chord_mantavcf2df.Rd

Converts a Manta VCF to a data.frame for processing with CHORD.

Usage

chord_mantavcf2df(in_vcf)

Arguments

in_vcf

Manta VCF.

Value

Tibble with two columns: sv_type and sv_len (INFO/SVTYPE and INFO/SVLEN from VCF).

Examples

in_vcf <- system.file("extdata/umccrise/sv/manta.vcf.gz", package = "gpgr")
d <- chord_mantavcf2df(in_vcf)