Function that updates a MAF file (produced by vcf2maf) with allelic support data

Function that updates a MAF file (produced by vcf2maf) with allelic support data

Usage

update_maf_allelic_support(calls, maf_fname_tmp, maf_fname, delete_raw = T)

Arguments

calls

data frame with variant calls

maf_fname_tmp

Filename for MAF produced by vcf2maf

maf_fname

Filename for MAF that includes variant allelic support (final MAF)

delete_raw

logical indicating if initial MAF should be deleted