Function that set PCGR report metadata — set_report_metadata • PCGR

Function that set PCGR report metadata

Usage

set_report_metadata(
  config,
  pcgr_data,
  virtual_panel_id = "-1",
  report_type = NULL,
  custom_bed = NULL
)

Arguments

config: PCGR config object
pcgr_data: PCGR data list object
virtual_panel_id: identifier for virtual panel
report_type: type of report ('germline' or 'somatic')
custom_bed: custom BED file with target loci for screening

Value

report_metadata Object with PCGR report metadata