Function that makes a plot with TMB boxplots for TCGA cohorts, highlighting the TMB estimate for a given sample and the cohort/primary site of interest — plot_tmb_primary_site_tcga • PCGR

Function that makes a plot with TMB boxplots for TCGA cohorts, highlighting the TMB estimate for a given sample and the cohort/primary site of interest

Usage

plot_tmb_primary_site_tcga(
  tcga_tmb,
  p_site = "Liver",
  tmb_estimate = 5,
  algorithm = "all_coding"
)

Arguments

tcga_tmb: data frame with TMB estimates for TCGA samples
p_site: primary tumor_site (sample)
tmb_estimate: estimate of mutational burden (sample)
algorithm: type of TMB algorithm