Function that matches variants to evidence items
Usage
match_eitems_to_var(
sample_calls,
db = "civic",
colset = NULL,
eitems = NULL,
region_marker = T
)
Arguments
- sample_calls
data frame with variant calls
- db
database with evidence items ('civic','cgi')
- colset
character vector with column names to pull out from sample_calls
- eitems
raw list of evidence items
- region_marker
logical indication if region biomarkers are to be matched or not