Function that loads all evidence items from CIViC and CGI, and combines them in a unified data.frame — load_all_eitems • PCGR

Function that loads all evidence items from CIViC and CGI, and combines them in a unified data.frame

Usage

load_all_eitems(eitems_raw = NULL, alteration_type = "MUT", origin = "Somatic")

Arguments

eitems_raw: raw data frame with evidence items
alteration_type: type of alteration ('MUT','MUT_LOF','CNA')
origin: variant origin ('Germline','Somatic')

Value

all_eitems