Function that detects kataegis events from a data frame with genomic cooordinates of mutations
Source:R/kataegis.R
kataegis_input.Rd
Function that detects kataegis events from a data frame with genomic cooordinates of mutations
Usage
kataegis_input(
variant_set,
chr = "chr",
pos = "pos",
ref = "ref",
alt = "alt",
build = NULL,
context_size = 10
)
Arguments
- variant_set
data frame with raw set of somatic mutations
- chr
column name in data that denotes chromosome
- pos
column name in data that denotes position
- ref
column name in data that denotes reference allele
- alt
column name in data that denotes alternate allele
- build
genome build (grch37 or hg38)
- context_size
size of neighbouring sequence context