Function that detects kataegis events from a data frame with genomic cooordinates of mutations

Function that detects kataegis events from a data frame with genomic cooordinates of mutations

Usage

kataegis_input(
  variant_set,
  chr = "chr",
  pos = "pos",
  ref = "ref",
  alt = "alt",
  build = NULL,
  context_size = 10
)

Arguments

variant_set

data frame with raw set of somatic mutations

chr

column name in data that denotes chromosome

pos

column name in data that denotes position

ref

column name in data that denotes reference allele

alt

column name in data that denotes alternate allele

build

genome build (grch37 or hg38)

context_size

size of neighbouring sequence context