Function that initiates PCGR/CPSR report object
Usage
init_report(
config = NULL,
class = NULL,
pcgr_data = NULL,
type = "somatic",
virtual_panel_id = "-1",
custom_bed = NULL
)
Arguments
- config
Object with configuration parameters
- class
report analysis section (NULL defaults to full report)
- pcgr_data
PCGR data bundle
- type
Type of report ('somatic' or 'germline')
- virtual_panel_id
identifier(s) for virtual panel id
- custom_bed
custom BED file with target loci for screening