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Checks for valid chromosome names in data frame of variants

Source: R/utils.R
get_valid_chromosomes.Rd

Checks for valid chromosome names in data frame of variants

Usage

get_valid_chromosomes(vcf_data_df, chromosome_column = "CHROM", bsg = NULL)

Arguments

vcf_data_df

data frame

chromosome_column

name of chromosome column

bsg

BSGenome object

Value

vcf_data_df valid data frame with valid mutations