Function that transforms a tier-structured variant data frame into a MAF-like data frame (for input to 2020plus, MutSigCV) — get_proper_maf_alleles • PCGR

Function that transforms a tier-structured variant data frame into a MAF-like data frame (for input to 2020plus, MutSigCV)

Usage

get_proper_maf_alleles(maf_df, genome_seq, seqinfo)

Arguments

maf_df: data frame with somatic mutations
genome_seq: BSgenome object
seqinfo: seqinfo object

Value

maf_all