Function that retrieves prevalent signatures for a given tumor type/primary site Data is collected from COSMIC v3.2.
Source:R/mutational_signatures.R
get_prevalent_site_signatures.Rd
Function that retrieves prevalent signatures for a given tumor type/primary site Data is collected from COSMIC v3.2.
Usage
get_prevalent_site_signatures(
site = "Any",
custom_collection = NULL,
pcgr_data = NULL,
min_prevalence_pct = 5,
incl_poss_artifacts = T
)
Arguments
- site
Primary tumor site
- custom_collection
Custom collection of signatures from COSMIC
- pcgr_data
PCGR data object
- min_prevalence_pct
Minimum prevalence (pct) of signature in cohorts associated with primary site - used to select reference signatures for inclusion in signature reconstruction
- incl_poss_artifacts
logical indicating if artefact signatures are to be included