Function that matches clinical evidence items (CIVIC, CBMDB) against somatic cancer variants detected in tumor — get_clin_assocs_snv_indel • PCGR

Function that matches clinical evidence items (CIVIC, CBMDB) against somatic cancer variants detected in tumor

Usage

get_clin_assocs_snv_indel(sample_calls, annotation_tags = NULL, eitems = NULL)

Arguments

sample_calls: data frame with sample variants
annotation_tags: list with annotation tags for display in report
eitems: data frame with clinical evidence items

Value

list