Function that generates germline-filtered callset and PCGR report statistics for a given tumor-only callsets — generate_report_data_tumor_only • PCGR

Function that generates germline-filtered callset and PCGR report statistics for a given tumor-only callsets

Usage

generate_report_data_tumor_only(
  unfiltered_sample_calls,
  sample_name,
  pcgr_config
)

Arguments

unfiltered_sample_calls: variant calls
sample_name: sample identifier
pcgr_config: Object with PCGR configuration parameters