Function that generates tiered variant sets for SNVs/InDels
Source:R/main.R
generate_report_data_snv_indel.Rd
Function that generates tiered variant sets for SNVs/InDels
Usage
generate_report_data_snv_indel(
sample_calls,
pcgr_data,
sample_name,
config,
callset = "somatic calls",
biomarker_mapping_stringency = 1,
tier_model = "pcgr_acmg"
)
Arguments
- sample_calls
variant calls subject to mutational signature analysis
- pcgr_data
object with PCGR annotation data
- sample_name
sample identifier
- config
Object with PCGR configuration parameters
- callset
type of calls
- biomarker_mapping_stringency
quality level for biomarkers
- tier_model
tier model (pcgr_acmg)