Function that generates mutational signatures data for PCGR report
Source:R/mutational_signatures.R
generate_report_data_signatures_mp.RdFunction that generates mutational signatures data for PCGR report
Usage
generate_report_data_signatures_mp(
vcf_fname,
pcgr_data,
sample_name,
pcgr_config,
type_specific = T
)Arguments
- vcf_fname
VCF file processed with PCGR annotation pipeline - possibly filtered for depth/allelic fraction
- pcgr_data
object with PCGR annotation data
- sample_name
sample identifier
- pcgr_config
Object with PCGR configuration parameters
- type_specific
logical indicating if all reference signatures are to be included (F) rather than those known to be prevalent in the tumor (T)