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Function that generates all contents of the cancer genome report (PCGR)

Source: R/main.R
generate_pcgr_report.Rd

Function that generates all contents of the cancer genome report (PCGR)

Usage

generate_pcgr_report(
  project_directory = NULL,
  pcgr_data = NULL,
  config = NULL,
  tier_model = "pcgr_acmg"
)

Arguments

project_directory

name of project directory

pcgr_data

List object with multiple PCGR data bundle annotations

config

Object with PCGR configuration parameters

tier_model

Variant tier model