Color encodings for report elements of PCGR/CPSR
Format
A list object with different report elements that are color-coded in PCGR/CPSR reports. Each list element have two vectors: 'levels' and 'values'. Currently, the following list elements are included:
pathogenicity - Colors for five-level pathogenicity levels (CPSR)
clinical_evidence - Colors for strength of evidence of cancer-variant associations (A-E)
tier - Colors for tier levels for variant prioritization (PCGR)
report_color - Colors for PCGR assay mode (tumor-control vs. tumor-only)
warning - Color for warning (low confidence in PCGR analysis output)
success - Color for success (no evident uncertainty in PCGR analysis output)