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Color encodings for report elements of PCGR/CPSR

Source: R/data.R
color_palette.Rd

Color encodings for report elements of PCGR/CPSR

Usage

color_palette

Format

A list object with different report elements that are color-coded in PCGR/CPSR reports. Each list element have two vectors: 'levels' and 'values'. Currently, the following list elements are included:

  • pathogenicity - Colors for five-level pathogenicity levels (CPSR)

  • clinical_evidence - Colors for strength of evidence of cancer-variant associations (A-E)

  • tier - Colors for tier levels for variant prioritization (PCGR)

  • report_color - Colors for PCGR assay mode (tumor-control vs. tumor-only)

  • warning - Color for warning (low confidence in PCGR analysis output)

  • success - Color for success (no evident uncertainty in PCGR analysis output)