Function that adds GWAS citation/phenotype to GWAS hit found through PCGR annotation

Function that adds GWAS citation/phenotype to GWAS hit found through PCGR annotation

Usage

append_gwas_citation_phenotype(
  vcf_data_df = NULL,
  gwas_citations_phenotypes = NULL,
  p_value_threshold = 0.000001
)

Arguments

vcf_data_df

Data frame of sample variants from VCF

gwas_citations_phenotypes

data frame with variant-phenotype associations (including citations) from GWAS

p_value_threshold

Required p-value to report associations from GWAS catalog

Value

vcf_data_df