Skip to contents

Parse headless file

Source: R/parse.R
parse_file_nohead.Rd

Parses files with no column names.

Usage

parse_file_nohead(fpath, schema, delim = "\t", ...)

Arguments

fpath

(character(1))
File path.

schema

(tibble())
Schema tibble with version and schema list-col.

delim

(character(1))
File delimiter.

...

Passed on to readr::read_delim.

Examples

path <- system.file("extdata/tool1", package = "nemo")
x <- Tool$new("tool1", pkg = "nemo", path = path)
schema <- x$raw_schemas_all |>
       dplyr::filter(.data$name == "table3") |>
       dplyr::select("version", "schema")
fpath <- file.path(path, "latest", "sampleA.tool1.table3.tsv")
(d <- parse_file_nohead(fpath, schema))
#> # A tibble: 5 × 2
#>   Variable      Value  
#>   <chr>         <chr>  
#> 1 SampleID      sampleA
#> 2 QCStatus      Pass   
#> 3 TotalReads    10000  
#> 4 MappedReads   9500   
#> 5 UnmappedReads 500