Title

Title

Usage

nemo_metadata(files, pkgs, input_id, output_id, input_dir, output_dir)

Arguments

files

(tibble())
Written files.

pkgs

(character(n))
Packages to include versions of.

input_id

Input ID to use for the dataset (e.g. run123).

output_id

(character(1))
Output ID to use for the dataset (e.g. run123).

input_dir

(character(n))
Input directory (can be multiple).

output_dir

(character(1))
Output directory.

Value

List of metadata.

Examples

files <- tibble::tibble(
  tbl_name = c("purple_qc", "amber_qc"),
  prefix = c("S123", "S123"),
  outpath = c("S123_purple_qc.tsv", "S123_amber_qc.tsv")
)
pkgs <- c("nemo")
input_id <- "run123"
output_id <- ulid::ulid()
input_dir <- "/path/to/wigits/run123"
output_dir <- "/path/to/nemo/outputs/run123"
nemo_metadata(files, pkgs, input_id, output_id, input_dir, output_dir)
#> $input_id
#> [x] "run123"
#> 
#> $output_id
#> [x] "01KGZS838C6JTH0PPJ8P8NB61G"
#> 
#> $input_dir
#> [1] "/path/to/wigits/run123"
#> 
#> $output_dir
#> [x] "/path/to/nemo/outputs/run123"
#> 
#> $pkg_versions
#> # A tibble: 1 × 2
#>   name  version
#>   <chr> <chr>  
#> 1 nemo  0.0.3  
#> 
#> $files
#> # A tibble: 2 × 3
#>   tbl_name  prefix outpath           
#>   <chr>     <chr>  <chr>             
#> 1 purple_qc S123   S123_purple_qc.tsv
#> 2 amber_qc  S123   S123_amber_qc.tsv 
#>