Prepare config schema from raw file — config_prep_raw

Prepares config schema from raw file.

Usage

config_prep_raw_schema(path, ...)

Arguments

path: (character(1))
File path.
...: Passed on to readr::read_delim.

Value

A tibble with columns field and type, each single-quoted for prettier YAML export.

Examples

path <- system.file("extdata", "tool1/latest/sampleA.tool1.table1.tsv", package = "nemo")
(x <- config_prep_raw_schema(path = path, delim = "\t"))
#> # A tibble: 7 × 2
#>   field        type   
#>   <chr>        <chr>  
#> 1 'SampleID'   'char' 
#> 2 'Chromosome' 'char' 
#> 3 'Start'      'float'
#> 4 'End'        'float'
#> 5 'metricX'    'float'
#> 6 'metricY'    'float'
#> 7 'metricZ'    'float'