Reads the linx.driver.catalog.tsv file.
Examples
x <- system.file("extdata/tables/COLO829v003T.linx.driver.catalog.tsv", package = "linxreport")
(l <- linx_drivercatalog_read(x))
#> # A tibble: 8 × 17
#> chromosome chromosomeBand gene transcript isCanonical driver category
#> <chr> <chr> <chr> <chr> <chr> <chr> <chr>
#> 1 chr5 p15.33 TERT ENST00000310581 true MUTATION ONCO
#> 2 chr7 q34 BRAF ENST00000644969 true MUTATION ONCO
#> 3 chr2 q33.1 SF3B1 ENST00000335508 true MUTATION ONCO
#> 4 chr9 p21.3 CDKN2A ENST00000304494 true MUTATION TSG
#> 5 chr9 p21.3 CDKN2A ENST00000579755 false MUTATION TSG
#> 6 chr3 q28 TP63 ENST00000264731 true MUTATION TSG
#> 7 chr10 q23.31 PTEN ENST00000371953 true DEL TSG
#> 8 chr10 q23.31 PTEN ENST00000371953 true DISRUPT… TSG
#> # ℹ 10 more variables: likelihoodMethod <chr>, driverLikelihood <dbl>,
#> # missense <dbl>, nonsense <dbl>, splice <dbl>, inframe <dbl>,
#> # frameshift <dbl>, biallelic <chr>, minCopyNumber <dbl>, maxCopyNumber <dbl>