Read LINX Clusters File

Reads the linx.clusters.tsv file.

Usage

linx_clusters_read(x)

Arguments

x

Path to linx.clusters.tsv file.

Value

The input file as a tibble.

Examples

x <- system.file("extdata/tables/COLO829v003T.linx.clusters.tsv", package = "linxreport")
(l <- linx_clusters_read(x))
#> # A tibble: 62 × 6
#>    clusterId category   synthetic resolvedType clusterCount clusterDesc      
#>    <chr>     <chr>      <chr>     <chr>               <dbl> <chr>            
#>  1 2         COMPLEX    false     COMPLEX                 3 DEL=1_INV=2      
#>  2 3         INCOMPLETE false     SGL                     1 SGL              
#>  3 4         SIMPLE     false     DEL                     1 DEL              
#>  4 5         SIMPLE     false     DEL                     1 DEL              
#>  5 6         SIMPLE     false     DEL                     1 DEL              
#>  6 7         SIMPLE     false     DEL                     1 DEL              
#>  7 8         SIMPLE     false     DUP                     1 DUP              
#>  8 9         SIMPLE     false     DUP                     1 DUP              
#>  9 10        SIMPLE     false     DEL                     1 DEL              
#> 10 11        COMPLEX    false     COMPLEX                 3 DEL=1_INV=1_SGL=1
#> # ℹ 52 more rows