libica.openapi.v3.ProjectWorkflowSessionApi

All URIs are relative to /ica/rest

Method	HTTP request	Description
get_workflow_session_configurations	GET /api/projects/{projectId}/workflowSessions/{workflowSessionId}/configurations	Retrieve the configurations of a workflow session.
get_workflow_session_inputs	GET /api/projects/{projectId}/workflowSessions/{workflowSessionId}/inputs	Retrieve the inputs of a workflow session.
get_workflow_sessions	GET /api/projects/{projectId}/workflowSessions	Retrieve the list of workflow sessions.
search_orchestrated_analyses	POST /api/projects/{projectId}/workflowSessions/{workflowSessionId}/analyses:search	Search analyses orchestrated by the workflow session.
search_workflow_sessions	POST /api/projects/{projectId}/workflowSessions:search	Search workflow sessions.

get_workflow_session_configurations

WorkflowSessionConfigurationList get_workflow_session_configurations(project_id, workflow_session_id)

Retrieve the configurations of a workflow session.

Example

• Bearer (JWT) Authentication (JwtAuth):
• Api Key Authentication (ApiKeyAuth):

import libica.openapi.v3
from libica.openapi.v3.models.workflow_session_configuration_list import WorkflowSessionConfigurationList
from libica.openapi.v3.rest import ApiException
from pprint import pprint

# Defining the host is optional and defaults to /ica/rest
# See configuration.py for a list of all supported configuration parameters.
configuration = libica.openapi.v3.Configuration(
    host = "/ica/rest"
)

# The client must configure the authentication and authorization parameters
# in accordance with the API server security policy.
# Examples for each auth method are provided below, use the example that
# satisfies your auth use case.

# Configure Bearer authorization (JWT): JwtAuth
configuration = libica.openapi.v3.Configuration(
    access_token = os.environ["BEARER_TOKEN"]
)

# Configure API key authorization: ApiKeyAuth
configuration.api_key['ApiKeyAuth'] = os.environ["API_KEY"]

# Uncomment below to setup prefix (e.g. Bearer) for API key, if needed
# configuration.api_key_prefix['ApiKeyAuth'] = 'Bearer'

# Enter a context with an instance of the API client
with libica.openapi.v3.ApiClient(configuration) as api_client:
    # Create an instance of the API class
    api_instance = libica.openapi.v3.ProjectWorkflowSessionApi(api_client)
    project_id = 'project_id_example' # str | 
    workflow_session_id = 'workflow_session_id_example' # str | The ID of the workflow session to retrieve the configuration for

    try:
        # Retrieve the configurations of a workflow session.
        api_response = api_instance.get_workflow_session_configurations(project_id, workflow_session_id)
        print("The response of ProjectWorkflowSessionApi->get_workflow_session_configurations:\n")
        pprint(api_response)
    except Exception as e:
        print("Exception when calling ProjectWorkflowSessionApi->get_workflow_session_configurations: %s\n" % e)

Parameters

Name	Type	Description	Notes
project_id	str
workflow_session_id	str	The ID of the workflow session to retrieve the configuration for

Return type

WorkflowSessionConfigurationList

Authorization

JwtAuth, ApiKeyAuth

HTTP request headers

• Content-Type: Not defined
• Accept: application/problem+json, application/vnd.illumina.v3+json

HTTP response details

Status code	Description	Response headers
200	The configurations of the workflow session are successfully retrieved.	-
0	A problem occurred.	-

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get_workflow_session_inputs

WorkflowSessionInputList get_workflow_session_inputs(project_id, workflow_session_id)

Retrieve the inputs of a workflow session.

Example

• Bearer (JWT) Authentication (JwtAuth):
• Api Key Authentication (ApiKeyAuth):

import libica.openapi.v3
from libica.openapi.v3.models.workflow_session_input_list import WorkflowSessionInputList
from libica.openapi.v3.rest import ApiException
from pprint import pprint

# Defining the host is optional and defaults to /ica/rest
# See configuration.py for a list of all supported configuration parameters.
configuration = libica.openapi.v3.Configuration(
    host = "/ica/rest"
)

# The client must configure the authentication and authorization parameters
# in accordance with the API server security policy.
# Examples for each auth method are provided below, use the example that
# satisfies your auth use case.

# Configure Bearer authorization (JWT): JwtAuth
configuration = libica.openapi.v3.Configuration(
    access_token = os.environ["BEARER_TOKEN"]
)

# Configure API key authorization: ApiKeyAuth
configuration.api_key['ApiKeyAuth'] = os.environ["API_KEY"]

# Uncomment below to setup prefix (e.g. Bearer) for API key, if needed
# configuration.api_key_prefix['ApiKeyAuth'] = 'Bearer'

# Enter a context with an instance of the API client
with libica.openapi.v3.ApiClient(configuration) as api_client:
    # Create an instance of the API class
    api_instance = libica.openapi.v3.ProjectWorkflowSessionApi(api_client)
    project_id = 'project_id_example' # str | 
    workflow_session_id = 'workflow_session_id_example' # str | The ID of the workflow session to retrieve the inputs for

    try:
        # Retrieve the inputs of a workflow session.
        api_response = api_instance.get_workflow_session_inputs(project_id, workflow_session_id)
        print("The response of ProjectWorkflowSessionApi->get_workflow_session_inputs:\n")
        pprint(api_response)
    except Exception as e:
        print("Exception when calling ProjectWorkflowSessionApi->get_workflow_session_inputs: %s\n" % e)

Parameters

Name	Type	Description	Notes
project_id	str
workflow_session_id	str	The ID of the workflow session to retrieve the inputs for

Return type

WorkflowSessionInputList

Authorization

JwtAuth, ApiKeyAuth

HTTP request headers

• Content-Type: Not defined
• Accept: application/problem+json, application/vnd.illumina.v3+json

HTTP response details

Status code	Description	Response headers
200	The inputs of the workflow session are successfully retrieved.	-
0	A problem occurred.	-

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get_workflow_sessions

WorkflowSessionPagedListV3 get_workflow_sessions(project_id, reference=reference, userreference=userreference, status=status, usertag=usertag, technicaltag=technicaltag, page_offset=page_offset, page_token=page_token, page_size=page_size, sort=sort)

Retrieve the list of workflow sessions.

This endpoint only returns V3 items. Use the search endpoint to get V4 items.

Example

• Bearer (JWT) Authentication (JwtAuth):
• Api Key Authentication (ApiKeyAuth):

import libica.openapi.v3
from libica.openapi.v3.models.workflow_session_paged_list_v3 import WorkflowSessionPagedListV3
from libica.openapi.v3.rest import ApiException
from pprint import pprint

# Defining the host is optional and defaults to /ica/rest
# See configuration.py for a list of all supported configuration parameters.
configuration = libica.openapi.v3.Configuration(
    host = "/ica/rest"
)

# The client must configure the authentication and authorization parameters
# in accordance with the API server security policy.
# Examples for each auth method are provided below, use the example that
# satisfies your auth use case.

# Configure Bearer authorization (JWT): JwtAuth
configuration = libica.openapi.v3.Configuration(
    access_token = os.environ["BEARER_TOKEN"]
)

# Configure API key authorization: ApiKeyAuth
configuration.api_key['ApiKeyAuth'] = os.environ["API_KEY"]

# Uncomment below to setup prefix (e.g. Bearer) for API key, if needed
# configuration.api_key_prefix['ApiKeyAuth'] = 'Bearer'

# Enter a context with an instance of the API client
with libica.openapi.v3.ApiClient(configuration) as api_client:
    # Create an instance of the API class
    api_instance = libica.openapi.v3.ProjectWorkflowSessionApi(api_client)
    project_id = 'project_id_example' # str | 
    reference = 'reference_example' # str | The reference to filter on. (optional)
    userreference = 'userreference_example' # str | The user-reference to filter on. (optional)
    status = 'status_example' # str | The status to filter on. (optional)
    usertag = 'usertag_example' # str | The user-tags to filter on. (optional)
    technicaltag = 'technicaltag_example' # str | The technical-tags to filter on. (optional)
    page_offset = 'page_offset_example' # str | [only use with offset-based paging]<br>The amount of rows to skip in the result. Ideally this is a multiple of the size parameter. Offset-based pagination has a result limit of 200K rows and does not guarantee unique results across pages (optional)
    page_token = 'page_token_example' # str | [only use with cursor-based paging]<br>The cursor to get subsequent results. The value to use is returned in the result when using cursor-based pagination. Cursor-based pagination guarantees complete and unique results across all pages. (optional)
    page_size = 'page_size_example' # str | [can be used with both offset- and cursor-based paging]<br>The amount of rows to return. Use in combination with the offset (when using offset-based pagination) or cursor (when using cursor-based pagination) parameter to get subsequent results (optional)
    sort = 'sort_example' # str | [only use with offset-based paging]<br>Which field to order the results by. The default order is ascending, suffix with ' desc' to sort descending (suffix ' asc' also works for ascending). Multiple values should be separated with commas. An example: \"?sort=sortAttribute1, sortAttribute2 desc\"  The attributes for which sorting is supported: - reference - userReference - pipeline - status - startDate - endDate - workflow  (optional)

    try:
        # Retrieve the list of workflow sessions.
        api_response = api_instance.get_workflow_sessions(project_id, reference=reference, userreference=userreference, status=status, usertag=usertag, technicaltag=technicaltag, page_offset=page_offset, page_token=page_token, page_size=page_size, sort=sort)
        print("The response of ProjectWorkflowSessionApi->get_workflow_sessions:\n")
        pprint(api_response)
    except Exception as e:
        print("Exception when calling ProjectWorkflowSessionApi->get_workflow_sessions: %s\n" % e)

Parameters

Name	Type	Description	Notes
project_id	str
reference	str	The reference to filter on.	[optional]
userreference	str	The user-reference to filter on.	[optional]
status	str	The status to filter on.	[optional]
usertag	str	The user-tags to filter on.	[optional]
technicaltag	str	The technical-tags to filter on.	[optional]
page_offset	str	[only use with offset-based paging]<br>The amount of rows to skip in the result. Ideally this is a multiple of the size parameter. Offset-based pagination has a result limit of 200K rows and does not guarantee unique results across pages	[optional]
page_token	str	[only use with cursor-based paging]<br>The cursor to get subsequent results. The value to use is returned in the result when using cursor-based pagination. Cursor-based pagination guarantees complete and unique results across all pages.	[optional]
page_size	str	[can be used with both offset- and cursor-based paging]<br>The amount of rows to return. Use in combination with the offset (when using offset-based pagination) or cursor (when using cursor-based pagination) parameter to get subsequent results	[optional]
sort	str	[only use with offset-based paging]<br>Which field to order the results by. The default order is ascending, suffix with ' desc' to sort descending (suffix ' asc' also works for ascending). Multiple values should be separated with commas. An example: \"?sort=sortAttribute1, sortAttribute2 desc\" The attributes for which sorting is supported: - reference - userReference - pipeline - status - startDate - endDate - workflow	[optional]

Return type

WorkflowSessionPagedListV3

Authorization

JwtAuth, ApiKeyAuth

HTTP request headers

• Content-Type: Not defined
• Accept: application/problem+json, application/vnd.illumina.v3+json

HTTP response details

Status code	Description	Response headers
200	The list of project workflow sessions is successfully retrieved.	-
0	A problem occurred.	-

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search_orchestrated_analyses

WorkflowSessionAnalysisPagedListV4 search_orchestrated_analyses(project_id, workflow_session_id, page_offset=page_offset, page_token=page_token, page_size=page_size, sort=sort, analysis_query_parameters=analysis_query_parameters)

Search analyses orchestrated by the workflow session.

Example

• Bearer (JWT) Authentication (JwtAuth):
• Api Key Authentication (ApiKeyAuth):

import libica.openapi.v3
from libica.openapi.v3.models.analysis_query_parameters import AnalysisQueryParameters
from libica.openapi.v3.models.workflow_session_analysis_paged_list_v4 import WorkflowSessionAnalysisPagedListV4
from libica.openapi.v3.rest import ApiException
from pprint import pprint

# Defining the host is optional and defaults to /ica/rest
# See configuration.py for a list of all supported configuration parameters.
configuration = libica.openapi.v3.Configuration(
    host = "/ica/rest"
)

# The client must configure the authentication and authorization parameters
# in accordance with the API server security policy.
# Examples for each auth method are provided below, use the example that
# satisfies your auth use case.

# Configure Bearer authorization (JWT): JwtAuth
configuration = libica.openapi.v3.Configuration(
    access_token = os.environ["BEARER_TOKEN"]
)

# Configure API key authorization: ApiKeyAuth
configuration.api_key['ApiKeyAuth'] = os.environ["API_KEY"]

# Uncomment below to setup prefix (e.g. Bearer) for API key, if needed
# configuration.api_key_prefix['ApiKeyAuth'] = 'Bearer'

# Enter a context with an instance of the API client
with libica.openapi.v3.ApiClient(configuration) as api_client:
    # Create an instance of the API class
    api_instance = libica.openapi.v3.ProjectWorkflowSessionApi(api_client)
    project_id = 'project_id_example' # str | 
    workflow_session_id = 'workflow_session_id_example' # str | 
    page_offset = 'page_offset_example' # str | [only use with offset-based paging]<br>The amount of rows to skip in the result. Ideally this is a multiple of the size parameter. Offset-based pagination has a result limit of 200K rows and does not guarantee unique results across pages (optional)
    page_token = 'page_token_example' # str | [only use with cursor-based paging]<br>The cursor to get subsequent results. The value to use is returned in the result when using cursor-based pagination. Cursor-based pagination guarantees complete and unique results across all pages. (optional)
    page_size = 'page_size_example' # str | [can be used with both offset- and cursor-based paging]<br>The amount of rows to return. Use in combination with the offset (when using offset-based pagination) or cursor (when using cursor-based pagination) parameter to get subsequent results (optional)
    sort = 'sort_example' # str | [only use with offset-based paging]<br>Which field to order the results by. The default order is ascending, suffix with ' desc' to sort descending (suffix ' asc' also works for ascending). Multiple values should be separated with commas. An example: \"?sort=sortAttribute1, sortAttribute2 desc\"  The attributes for which sorting is supported: - reference - userReference - pipeline - status - startDate - endDate - summary  (optional)
    analysis_query_parameters = libica.openapi.v3.AnalysisQueryParameters() # AnalysisQueryParameters |  (optional)

    try:
        # Search analyses orchestrated by the workflow session.
        api_response = api_instance.search_orchestrated_analyses(project_id, workflow_session_id, page_offset=page_offset, page_token=page_token, page_size=page_size, sort=sort, analysis_query_parameters=analysis_query_parameters)
        print("The response of ProjectWorkflowSessionApi->search_orchestrated_analyses:\n")
        pprint(api_response)
    except Exception as e:
        print("Exception when calling ProjectWorkflowSessionApi->search_orchestrated_analyses: %s\n" % e)

Parameters

Name	Type	Description	Notes
project_id	str
workflow_session_id	str
page_offset	str	[only use with offset-based paging]<br>The amount of rows to skip in the result. Ideally this is a multiple of the size parameter. Offset-based pagination has a result limit of 200K rows and does not guarantee unique results across pages	[optional]
page_token	str	[only use with cursor-based paging]<br>The cursor to get subsequent results. The value to use is returned in the result when using cursor-based pagination. Cursor-based pagination guarantees complete and unique results across all pages.	[optional]
page_size	str	[can be used with both offset- and cursor-based paging]<br>The amount of rows to return. Use in combination with the offset (when using offset-based pagination) or cursor (when using cursor-based pagination) parameter to get subsequent results	[optional]
sort	str	[only use with offset-based paging]<br>Which field to order the results by. The default order is ascending, suffix with ' desc' to sort descending (suffix ' asc' also works for ascending). Multiple values should be separated with commas. An example: \"?sort=sortAttribute1, sortAttribute2 desc\" The attributes for which sorting is supported: - reference - userReference - pipeline - status - startDate - endDate - summary	[optional]
analysis_query_parameters	AnalysisQueryParameters		[optional]

Return type

WorkflowSessionAnalysisPagedListV4

Authorization

JwtAuth, ApiKeyAuth

HTTP request headers

• Content-Type: application/vnd.illumina.v3+json, application/json
• Accept: application/problem+json, application/vnd.illumina.v3+json

HTTP response details

Status code	Description	Response headers
200	The list of orchestrated analyses is successfully retrieved.	-
0	A problem occurred.	-

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search_workflow_sessions

WorkflowSessionPagedListV4 search_workflow_sessions(project_id, page_offset=page_offset, page_token=page_token, page_size=page_size, sort=sort, analysis_query_parameters=analysis_query_parameters)

Search workflow sessions.

Example

• Bearer (JWT) Authentication (JwtAuth):
• Api Key Authentication (ApiKeyAuth):

import libica.openapi.v3
from libica.openapi.v3.models.analysis_query_parameters import AnalysisQueryParameters
from libica.openapi.v3.models.workflow_session_paged_list_v4 import WorkflowSessionPagedListV4
from libica.openapi.v3.rest import ApiException
from pprint import pprint

# Defining the host is optional and defaults to /ica/rest
# See configuration.py for a list of all supported configuration parameters.
configuration = libica.openapi.v3.Configuration(
    host = "/ica/rest"
)

# The client must configure the authentication and authorization parameters
# in accordance with the API server security policy.
# Examples for each auth method are provided below, use the example that
# satisfies your auth use case.

# Configure Bearer authorization (JWT): JwtAuth
configuration = libica.openapi.v3.Configuration(
    access_token = os.environ["BEARER_TOKEN"]
)

# Configure API key authorization: ApiKeyAuth
configuration.api_key['ApiKeyAuth'] = os.environ["API_KEY"]

# Uncomment below to setup prefix (e.g. Bearer) for API key, if needed
# configuration.api_key_prefix['ApiKeyAuth'] = 'Bearer'

# Enter a context with an instance of the API client
with libica.openapi.v3.ApiClient(configuration) as api_client:
    # Create an instance of the API class
    api_instance = libica.openapi.v3.ProjectWorkflowSessionApi(api_client)
    project_id = 'project_id_example' # str | 
    page_offset = 'page_offset_example' # str | [only use with offset-based paging]<br>The amount of rows to skip in the result. Ideally this is a multiple of the size parameter. Offset-based pagination has a result limit of 200K rows and does not guarantee unique results across pages (optional)
    page_token = 'page_token_example' # str | [only use with cursor-based paging]<br>The cursor to get subsequent results. The value to use is returned in the result when using cursor-based pagination. Cursor-based pagination guarantees complete and unique results across all pages. (optional)
    page_size = 'page_size_example' # str | [can be used with both offset- and cursor-based paging]<br>The amount of rows to return. Use in combination with the offset (when using offset-based pagination) or cursor (when using cursor-based pagination) parameter to get subsequent results (optional)
    sort = 'sort_example' # str | [only use with offset-based paging]<br>Which field to order the results by. The default order is ascending, suffix with ' desc' to sort descending (suffix ' asc' also works for ascending). Multiple values should be separated with commas. An example: \"?sort=sortAttribute1, sortAttribute2 desc\"  The attributes for which sorting is supported: - reference - userReference - pipeline - status - startDate - endDate - workflow  (optional)
    analysis_query_parameters = libica.openapi.v3.AnalysisQueryParameters() # AnalysisQueryParameters |  (optional)

    try:
        # Search workflow sessions.
        api_response = api_instance.search_workflow_sessions(project_id, page_offset=page_offset, page_token=page_token, page_size=page_size, sort=sort, analysis_query_parameters=analysis_query_parameters)
        print("The response of ProjectWorkflowSessionApi->search_workflow_sessions:\n")
        pprint(api_response)
    except Exception as e:
        print("Exception when calling ProjectWorkflowSessionApi->search_workflow_sessions: %s\n" % e)

Parameters

Name	Type	Description	Notes
project_id	str
page_offset	str	[only use with offset-based paging]<br>The amount of rows to skip in the result. Ideally this is a multiple of the size parameter. Offset-based pagination has a result limit of 200K rows and does not guarantee unique results across pages	[optional]
page_token	str	[only use with cursor-based paging]<br>The cursor to get subsequent results. The value to use is returned in the result when using cursor-based pagination. Cursor-based pagination guarantees complete and unique results across all pages.	[optional]
page_size	str	[can be used with both offset- and cursor-based paging]<br>The amount of rows to return. Use in combination with the offset (when using offset-based pagination) or cursor (when using cursor-based pagination) parameter to get subsequent results	[optional]
sort	str	[only use with offset-based paging]<br>Which field to order the results by. The default order is ascending, suffix with ' desc' to sort descending (suffix ' asc' also works for ascending). Multiple values should be separated with commas. An example: \"?sort=sortAttribute1, sortAttribute2 desc\" The attributes for which sorting is supported: - reference - userReference - pipeline - status - startDate - endDate - workflow	[optional]
analysis_query_parameters	AnalysisQueryParameters		[optional]

Return type

WorkflowSessionPagedListV4

Authorization

JwtAuth, ApiKeyAuth

HTTP request headers

• Content-Type: application/vnd.illumina.v3+json, application/json
• Accept: application/problem+json, application/vnd.illumina.v3+json

HTTP response details

Status code	Description	Response headers
200	The list of project workflow sessions is successfully retrieved.	-
0	A problem occurred.	-

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