libica.openapi.v2.BundleToolApi¶

All URIs are relative to /ica/rest

Method	HTTP request	Description
get_bundle_tools	GET /api/bundles/{bundleId}/tools	Retrieve a list of bundle tools.
get_tools_eligible_for_linking_to_bundle	GET /api/bundles/{bundleId}/tools/eligibleForLinking	Retrieve a list of tools eligible for linking to the bundle.
link_tool_to_bundle	POST /api/bundles/{bundleId}/tools/{toolId}	Link a tool to a bundle
unlink_tool_from_bundle	DELETE /api/bundles/{bundleId}/tools/{toolId}	Unlink a tool from this bundle.

get_bundle_tools¶

BundleToolsList get_bundle_tools(bundle_id)

Retrieve a list of bundle tools.

Example¶

Api Key Authentication (ApiKeyAuth):
Bearer (JWT) Authentication (JwtAuth):

import time
import libica.openapi.v2
from libica.openapi.v2.api import bundle_tool_api
from libica.openapi.v2.model.bundle_tools_list import BundleToolsList
from libica.openapi.v2.model.problem import Problem
from pprint import pprint
# Defining the host is optional and defaults to /ica/rest
# See configuration.py for a list of all supported configuration parameters.
configuration = libica.openapi.v2.Configuration(
    host = "/ica/rest"
)

# The client must configure the authentication and authorization parameters
# in accordance with the API server security policy.
# Examples for each auth method are provided below, use the example that
# satisfies your auth use case.

# Configure API key authorization: ApiKeyAuth
configuration.api_key['ApiKeyAuth'] = 'YOUR_API_KEY'

# Uncomment below to setup prefix (e.g. Bearer) for API key, if needed
# configuration.api_key_prefix['ApiKeyAuth'] = 'Bearer'

# Configure Bearer authorization (JWT): JwtAuth
configuration = libica.openapi.v2.Configuration(
    access_token = 'YOUR_BEARER_TOKEN'
)

# Enter a context with an instance of the API client
with libica.openapi.v2.ApiClient(configuration) as api_client:
    # Create an instance of the API class
    api_instance = bundle_tool_api.BundleToolApi(api_client)
    bundle_id = "bundleId_example" # str | The ID of the bundle to get tools from

    # example passing only required values which don't have defaults set
    try:
        # Retrieve a list of bundle tools.
        api_response = api_instance.get_bundle_tools(bundle_id)
        pprint(api_response)
    except libica.openapi.v2.ApiException as e:
        print("Exception when calling BundleToolApi->get_bundle_tools: %s\n" % e)

Parameters¶

Name	Type	Description	Notes
bundle_id	str	The ID of the bundle to get tools from

Return type¶

BundleToolsList

Authorization¶

ApiKeyAuth, JwtAuth

HTTP request headers¶

Content-Type: Not defined
Accept: application/problem+json, application/vnd.illumina.v3+json

HTTP response details¶

Status code	Description	Response headers
200	The list of bundle tools is successfully retrieved.	-
0	A problem occurred.	-

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get_tools_eligible_for_linking_to_bundle¶

CwlToolDefinitionList get_tools_eligible_for_linking_to_bundle(bundle_id)

Retrieve a list of tools eligible for linking to the bundle.

Example¶

Api Key Authentication (ApiKeyAuth):
Bearer (JWT) Authentication (JwtAuth):

import time
import libica.openapi.v2
from libica.openapi.v2.api import bundle_tool_api
from libica.openapi.v2.model.cwl_tool_definition_list import CwlToolDefinitionList
from libica.openapi.v2.model.problem import Problem
from pprint import pprint
# Defining the host is optional and defaults to /ica/rest
# See configuration.py for a list of all supported configuration parameters.
configuration = libica.openapi.v2.Configuration(
    host = "/ica/rest"
)

# The client must configure the authentication and authorization parameters
# in accordance with the API server security policy.
# Examples for each auth method are provided below, use the example that
# satisfies your auth use case.

# Configure API key authorization: ApiKeyAuth
configuration.api_key['ApiKeyAuth'] = 'YOUR_API_KEY'

# Uncomment below to setup prefix (e.g. Bearer) for API key, if needed
# configuration.api_key_prefix['ApiKeyAuth'] = 'Bearer'

# Configure Bearer authorization (JWT): JwtAuth
configuration = libica.openapi.v2.Configuration(
    access_token = 'YOUR_BEARER_TOKEN'
)

# Enter a context with an instance of the API client
with libica.openapi.v2.ApiClient(configuration) as api_client:
    # Create an instance of the API class
    api_instance = bundle_tool_api.BundleToolApi(api_client)
    bundle_id = "bundleId_example" # str | The ID of the bundle to get the eligible tools for

    # example passing only required values which don't have defaults set
    try:
        # Retrieve a list of tools eligible for linking to the bundle.
        api_response = api_instance.get_tools_eligible_for_linking_to_bundle(bundle_id)
        pprint(api_response)
    except libica.openapi.v2.ApiException as e:
        print("Exception when calling BundleToolApi->get_tools_eligible_for_linking_to_bundle: %s\n" % e)

Parameters¶

Name	Type	Description	Notes
bundle_id	str	The ID of the bundle to get the eligible tools for

Return type¶

CwlToolDefinitionList

Authorization¶

ApiKeyAuth, JwtAuth

HTTP request headers¶

Content-Type: Not defined
Accept: application/problem+json, application/vnd.illumina.v3+json

HTTP response details¶

Status code	Description	Response headers
200	The list of tools is successfully retrieved.	-
0	A problem occurred.	-

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link_tool_to_bundle¶

link_tool_to_bundle(bundle_id, tool_id)

Link a tool to a bundle

Example¶

Api Key Authentication (ApiKeyAuth):
Bearer (JWT) Authentication (JwtAuth):

import time
import libica.openapi.v2
from libica.openapi.v2.api import bundle_tool_api
from libica.openapi.v2.model.problem import Problem
from pprint import pprint
# Defining the host is optional and defaults to /ica/rest
# See configuration.py for a list of all supported configuration parameters.
configuration = libica.openapi.v2.Configuration(
    host = "/ica/rest"
)

# The client must configure the authentication and authorization parameters
# in accordance with the API server security policy.
# Examples for each auth method are provided below, use the example that
# satisfies your auth use case.

# Configure API key authorization: ApiKeyAuth
configuration.api_key['ApiKeyAuth'] = 'YOUR_API_KEY'

# Uncomment below to setup prefix (e.g. Bearer) for API key, if needed
# configuration.api_key_prefix['ApiKeyAuth'] = 'Bearer'

# Configure Bearer authorization (JWT): JwtAuth
configuration = libica.openapi.v2.Configuration(
    access_token = 'YOUR_BEARER_TOKEN'
)

# Enter a context with an instance of the API client
with libica.openapi.v2.ApiClient(configuration) as api_client:
    # Create an instance of the API class
    api_instance = bundle_tool_api.BundleToolApi(api_client)
    bundle_id = "bundleId_example" # str | The ID of the bundle to link the tool to
    tool_id = "toolId_example" # str | The ID of the tool to link

    # example passing only required values which don't have defaults set
    try:
        # Link a tool to a bundle
        api_instance.link_tool_to_bundle(bundle_id, tool_id)
    except libica.openapi.v2.ApiException as e:
        print("Exception when calling BundleToolApi->link_tool_to_bundle: %s\n" % e)

Parameters¶

Name	Type	Description	Notes
bundle_id	str	The ID of the bundle to link the tool to
tool_id	str	The ID of the tool to link

Return type¶

void (empty response body)

Authorization¶

ApiKeyAuth, JwtAuth

HTTP request headers¶

Content-Type: Not defined
Accept: application/problem+json

HTTP response details¶

Status code	Description	Response headers
204	The tool is successfully linked to the bundle.	-
0	A problem occurred.	-

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unlink_tool_from_bundle¶

unlink_tool_from_bundle(bundle_id, tool_id)

Unlink a tool from this bundle.

Example¶

Api Key Authentication (ApiKeyAuth):
Bearer (JWT) Authentication (JwtAuth):

import time
import libica.openapi.v2
from libica.openapi.v2.api import bundle_tool_api
from libica.openapi.v2.model.problem import Problem
from pprint import pprint
# Defining the host is optional and defaults to /ica/rest
# See configuration.py for a list of all supported configuration parameters.
configuration = libica.openapi.v2.Configuration(
    host = "/ica/rest"
)

# The client must configure the authentication and authorization parameters
# in accordance with the API server security policy.
# Examples for each auth method are provided below, use the example that
# satisfies your auth use case.

# Configure API key authorization: ApiKeyAuth
configuration.api_key['ApiKeyAuth'] = 'YOUR_API_KEY'

# Uncomment below to setup prefix (e.g. Bearer) for API key, if needed
# configuration.api_key_prefix['ApiKeyAuth'] = 'Bearer'

# Configure Bearer authorization (JWT): JwtAuth
configuration = libica.openapi.v2.Configuration(
    access_token = 'YOUR_BEARER_TOKEN'
)

# Enter a context with an instance of the API client
with libica.openapi.v2.ApiClient(configuration) as api_client:
    # Create an instance of the API class
    api_instance = bundle_tool_api.BundleToolApi(api_client)
    bundle_id = "bundleId_example" # str | 
    tool_id = "toolId_example" # str | 

    # example passing only required values which don't have defaults set
    try:
        # Unlink a tool from this bundle.
        api_instance.unlink_tool_from_bundle(bundle_id, tool_id)
    except libica.openapi.v2.ApiException as e:
        print("Exception when calling BundleToolApi->unlink_tool_from_bundle: %s\n" % e)

Parameters¶

Name	Type	Description	Notes
bundle_id	str
tool_id	str

Return type¶

void (empty response body)

Authorization¶

ApiKeyAuth, JwtAuth

HTTP request headers¶

Content-Type: Not defined
Accept: application/problem+json

HTTP response details¶

Status code	Description	Response headers
204	The tool is successfully unlinked from this bundle.	-
0	A problem occurred.	-

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