Lists files in a GDS directory.
Usage
gds_list_files_dir(
gdsdir,
token = Sys.getenv("ICA_ACCESS_TOKEN"),
page_size = NULL,
include_url = FALSE,
no_recurse = TRUE,
page_token = NULL,
recursive = NULL
)Arguments
- gdsdir
Full path to GDS directory.
- token
ICA access token (def: $ICA_ACCESS_TOKEN env var).
- page_size
Page size (def: 10 via ICA API).
- include_url
Include presigned URLs to all files within the GDS directory (def: FALSE via ICA API).
- no_recurse
Do not recurse through the file list i.e. just give the first <page_size> items without recursing further down the list using <page_token>.
- page_token
Page token (def: NULL). Used internally for recursion.
- recursive
Should files be returned recursively in and under the specified GDS directory, or only directly in the specified GDS directory (def: TRUE via ICA API).
Value
A tibble with file ID, basename, size, last modified timestamp, full GDS path, and presigned URL if requested.
Examples
if (FALSE) { # \dontrun{
gdsdir <- file.path(
"gds://production/analysis_data/SBJ00699/umccrise",
"202203277dcf8562/L2200352__L2100146/SBJ00699__MDX220105/coverage"
)
token <- ica_token_validate()
page_size <- 11
include_url <- F
page_token <- NULL
no_recurse <- TRUE
recursive <- NULL
gds_list_files_dir(gdsdir, token, page_size, include_url, no_recurse, page_token, recursive)
} # }