List FASTQs In GDS Directory

List FASTQs In GDS Directory

Usage

gds_files_list_fastq(gdsdir, token, include_url = FALSE, page_size = 100)

Arguments

gdsdir

GDS directory.

token

ICA access token.

include_url

Include presigned URLs to all files within the GDS directory.

page_size

Page size.

Value

A tibble with type, bname, size, file_id, path, and presigned URL.

Examples

if (FALSE) { # \dontrun{
prim <- "gds://production/primary_data"
run <- "240719_A00130_0323_BHMCYHDSXC/202407205bad380d/BiModal_BM-5L"
gdsdir <- file.path(prim, run)
token <- Sys.getenv("ICA_ACCESS_TOKEN")
include_url <- F
page_size <- 100
gds_files_list_fastq(gdsdir, token, include_url, page_size)
} # }