Contains methods for reading and displaying contents of the
snv_20XX.tsv.gz
file with SNV signatures output from umccrise.
Super class
dracarys::File
-> UmSigsSnvFile
Methods
Method read()
Reads the snv.tsv.gz
file output from umccrise.
Method write()
Writes a tidy version of the snv_20XX.tsv.gz
signature file output from umccrise.
Examples
if (FALSE) {
x <- "/path/to/snv_2015.tsv.gz"
d <- UmSigsSnvFile$new(x)
d_parsed <- d$read() # or read(d)
d$write(d_parsed, out_dir = tempdir(), prefix = "sample705", out_format = "tsv")
}