Contains methods for reading and displaying contents of the
qc_summary.tsv.gz
file with QC summary metrics output from umccrise.
Super class
dracarys::File
-> UmQcSumFile
Methods
Method read()
Reads the qc_summary.tsv.gz
file output from umccrise.
Method write()
Writes a tidy version of the qc_summary.tsv.gz
QC summary file output
from umccrise.
Examples
if (FALSE) { # \dontrun{
x <- "/path/to/snv_2015.tsv.gz"
d <- UmQcSumFile$new(x)
d_parsed <- d$read() # or read(d)
d$write(d_parsed, out_dir = tempdir(), prefix = "sample705", out_format = "tsv")
} # }