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Contains methods for reading and displaying contents of the chord.tsv.gz file output from umccrise.

Super class

dracarys::File -> UmChordTsvFile

Methods

Inherited methods


Method read()

Reads the chord.tsv.gz file output from umccrise.

Usage

UmChordTsvFile$read()

Returns

A tibble.


Method write()

Writes a tidy version of the chord.tsv.gz file output from umccrise.

Usage

UmChordTsvFile$write(
  d,
  out_dir = NULL,
  prefix,
  out_format = "tsv",
  drid = NULL
)

Arguments

d

Parsed object from self$read().

out_dir

Output directory.

prefix

Prefix of output file(s).

out_format

Format of output file(s).

drid

dracarys ID to use for the dataset (e.g. wfrid.123, prid.456).


Method clone()

The objects of this class are cloneable with this method.

Usage

UmChordTsvFile$clone(deep = FALSE)

Arguments

deep

Whether to make a deep clone.

Examples

if (FALSE) {
x <- "/path/to/chord.tsv.gz"
d <- UmChordTsvFile$new(x)
d_parsed <- d$read() # or read(d)
d$write(d_parsed, out_dir = tempdir(), prefix = "sample705", out_format = "tsv")
}