Contains methods for reading and displaying contents of the
MergedSmallVariants.vcf.gz
file output from TSO.
Super class
dracarys::File
-> TsoMergedSmallVariantsVcfFile
Methods
Method read()
Reads the MergedSmallVariants.vcf.gz
file output from TSO.
Method write()
Writes a tidy version of the MergedSmallVariants.vcf.gz
file output from TSO.
Examples
if (FALSE) {
x <- "MergedSmallVariants.vcf.gz"
d <- TsoMergedSmallVariantsVcfFile$new(x)
d_parsed <- d$read() # or read(d)
d$write(d_parsed, out_dir = tempdir(), prefix = "sample705", out_format = "tsv")
d$write(d_parsed, prefix = "FOO", out_format = "delta", drid = "wfr.123")
}