Contains methods for reading and displaying contents of the
CopyNumberVariants.vcf.gz
file output from TSO.
Super class
dracarys::File
-> TsoCopyNumberVariantsVcfFile
Methods
Method read()
Reads the CopyNumberVariants.vcf.gz
file output from TSO.
Method write()
Writes a tidy version of the CopyNumberVariants.vcf.gz
file output from TSO.
Examples
if (FALSE) { # \dontrun{
x <- normalizePath("CopyNumberVariants.vcf.gz")
d <- TsoCopyNumberVariantsVcfFile$new(x)
d_parsed <- d$read() # or read(d)
d$write(d_parsed, out_dir = tempdir(), prefix = "sample705", out_format = "tsv")
d$write(d_parsed, prefix = "FOO", out_format = "delta", drid = "wfr.123")
} # }