Manhattan Plot for Copynumber Data — plot_cnv_manhattan • RNAsum

Manhattan Plot for Copynumber Data

Usage

plot_cnv_manhattan(
  cnv_data,
  genes_to_highlight = NULL,
  title = "",
  show_legend = TRUE,
  point_size = 3,
  highlight_size = 8,
  cn_top = NULL,
  cn_bottom = NULL
)

Arguments

cnv_data: CN data frame including Gene, P, Diff_Perc, Diff_Z_score, Alterations, GENEBIOTYPE, ENSEMBL, SEQNAME, GENESEQSTART, GENESEQEND, Immunic_Cycle_Role.
genes_to_highlight: Atomic vector of gene names to highlight.
title: Plot title.
show_legend: Show legend.
point_size: Point size.
highlight_size: Highlight size.
cn_top: Top CN threshold.
cn_bottom: Bottom CN threshold.

Value

Plotly object.

Examples

if (FALSE) {
cnv_data <- data.annot
genes_to_highlight <- unique(data.sub$Gene)
}