Generate scatterplot with per-gene expression values (y-axis), CN values (x-axis) and mutation status info (colours), if provided — mutCNexprPlot • RNAsum

Generates scatterplot with per-gene expression values (y-axis), CN values (x-axis) and mutation status info (colours), if provided

Usage

mutCNexprPlot(
  data,
  alt_data = FALSE,
  cn_bottom = cn_bottom,
  cn_top = cn_top,
  comp_cancer,
  type = "z",
  report_dir
)

Arguments

data: Input data.
alt_data: Boolean (Generates scatterplot with per-gene expression values (y-axis)).
cn_bottom: Bottom value for copy number.
cn_top: Top value for copy number.
comp_cancer: Complete cancer group.
type: Type.
report_dir: Report directory.

Value

Scatterplot with per-gene expression values (y-axis), CN values (x-axis) and mutation status info (colours), if provided.