Generates cumulative distribution function (CDF) plot for selected gene. If option "addBoxPlot" = TRUE, then generate additional boxplot below to show the data variance for selected gene in individual groups
Usage
cdfPlot(
gene,
data,
targets,
sampleName,
int_cancer,
ext_cancer,
comp_cancer,
add_cancer = NULL,
addBoxPlot = FALSE,
scaling = "gene-wise",
report_dir
)Arguments
- gene
Gene of interest.
- data
Input data.
- targets
Target data set.
- sampleName
Sample name.
- int_cancer
Internal cancer group.
- ext_cancer
External cancer group.
- comp_cancer
Complete cancer group.
- add_cancer
Used for reordering groups.
- addBoxPlot
Add boc plot (boolean).
- scaling
Gene-wise or sample-wise.
- report_dir
Output directory.